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Results from individual_svg function

Source: R/data_results_individual_svg.R
results_individual_svg.Rd

Results from individual_svg function

Arguments

results_individual_svg

contains a list object, with the results obtained applying individual_svg function to an external dataset from the spatialLIBD package. Below the code used to obtain 'results_individual_svg'.

Value

A List of 7 elements - one element for each spatial cluster

See also

svg_test, individual_svg

Author

Peiying Cai peiying.cai@uzh.ch, Simone Tiberi simone.tiberi@unibo.it

Examples

# load the input data:
# data("LIBD_subset", package = "DESpace")
# LIBD_subset
# load pre-computed results (obtained via `svg_test`)
# data("results_svg_test", package = "DESpace")
# results_svg_test

# Function `individual_svg()` can be used to identify SVGs for each individual cluster.
# Parameter `spatial_cluster` indicates the column names of `colData(spe)` 
# containing spatial clusters.
# set.seed(123)
# results_individual_svg <- individual_svg(LIBD_subset,
#                                            edgeR_y = results_svg_test$estimated_y,
#                                            spatial_cluster = "layer_guess_reordered")
# save(results_individual_svg, file = "./DESpace/data/results_individual_svg.RData")